RT Journal Article T1 Conservation Challenges Under Taxonomic Uncertainty: Introgression Patterns and Environmental Correlates in Mediterranean Brown Trout A1 Aparicio Manau, Enric A1 Rocaspana, Rafel A1 García Berthou, Emili A1 Alcaraz Cazorla, Carles A1 Vera Rodríguez, Manuel A1 Heras Mena, Sandra A1 García Marín, José Luis K1 Conservation genetics K1 Hierarchical partitioning K1 IUCN assessment K1 Range contraction K1 Salmo trutta complex AB The Mediterranean brown trout (Salmo trutta species complex) comprises genetically and ecologically distinct lineages primarily distributed across the Western Mediterranean region. Conservation of the Mediterranean brown trout is complicated by unresolved taxonomy. Although some populations have recently been recognised as distinct species, most—including those in the Iberian Peninsula—remain classified under the nominal S. trutta, which is currently listed as Least Concern by the IUCN. This taxonomic ambiguity masks severe conservation threats, particularly the widespread genetic introgression from stocked Atlantic-origin trout. In this study, we assessed introgression patterns, environmental drivers and conservation implications for Mediterranean brown trout populations in Catalonia (northeastern Iberian Peninsula). Genetic data from 134 sites were analysed using microsatellite markers and LDH-C1* allele frequencies, and the influence of historical stocking intensity and climatic variables on introgression was evaluated using hierarchical partitioning and regression models. Our results revealed extensive introgression, with only 10.4% of the populations retaining genetic purity. Stocking intensity was the primary predictor of introgression, followed by temperature and precipitation seasonality. Although the overall distribution of brown trout in the region remains stable, genetically pure Mediterranean populations have experienced severe range contraction, with a 61.5% reduction in extent of occurrence (EOO) and an 89.6% reduction in area of occupancy (AOO). This decline might meet IUCN criterion B for Endangered, although a formal assessment is currently impeded by taxonomic uncertainty and data limitations. The recognition of Mediterranean brown trout as a distinct species, alongside urgent measures to halt ongoing introgression and preserveremaining pure populations, is essential for its long-term conservation. PB Wiley SN 1052-7613 YR 2025 FD 2025-11-12 LK https://hdl.handle.net/10347/46168 UL https://hdl.handle.net/10347/46168 LA eng NO Aparicio, Enric & Rocaspana, Rafel & Alcaraz, Carles & Vera, Manuel & Heras, Sandra & García-Marín, J.L. (2025). Conservation challenges under taxonomic uncertainty: introgression patterns and environmental correlates in Mediterranean brown trout. Aquatic Conservation: Marine and Freshwater Ecosystems, 35. 10.1002/aqc.70269 NO This work was supported by the Generalitat de Catalunya (CERCA programme) and by grants PID2023-146173NB-C21, RED2022-134338-T, TED2021-129889B-I00, PID2022-141549OB-I00, and RTI2018-095760- B-C22 funded by MICIU/AEI/10.13039/501100011033 and the European Union by “ERDF A way of making Europe” and “NextGenerationEU/ PRTR”. DS Minerva RD 23 may 2026